Analysis code for the paper "RF shimming in the cervical spinal cord at 7T"
Jupyter NotebookDaniel Papp, Kyle M. Gilbert, Gaspard Cereza, Alexandre D’Astous, Nibardo Lopez-Rios, Mathieu Boudreau, Marcus Couch, Pedram Yazdanbakhsh, Robert L. Barry, Eva Alonso Ortiz, Julien Cohen-Adad
Paper is not enough: Crowdsourcing the T1 mapping common ground via the ISMRM reproducibility challenge
Jupyter NotebookMathieu Boudreau, Agah Karakuzu, Julien Cohen-Adad, Ecem Bozkurt, Madeline Carr, Marco Castellaro, Luis Concha, Mariya Doneva, Seraina A. Dual, Alex Ensworth, Alexandru Foias, Véronique Fortier, Refaat E. Gabr, Guillaume Gilbert, Carri K. Glide-Hurst, Matthew Grech-Sollars, Siyuan Hu, Oscar Jalnefjord, Jorge Jovicich, Kübra Keskin, Peter Koken, Anastasia Kolokotronis, Simran Kukran, Nam. G. Lee, Ives R. Levesque, Bochao Li, Dan Ma, Burkhard Mädler, Nyasha Maforo, Jamie Near, Erick Pasaye, Alonso Ramirez-Manzanares, Ben Statton, Christian Stehning, Stefano Tambalo, Ye Tian, Chenyang Wang, Kilian Weis, Niloufar Zakariaei, Shuo Zhang, Ziwei Zhao, Nikola Stikov
Quantitative T1 MRI
Jupyter NotebookMathieu Boudreau, Kathryn E. Keenan, Nikola Stikov
Longitudinal stability of brain and spinal cord quantitative MRI measures
Jupyter NotebookMathieu Boudreau, Agah Karakuzu, Arnaud Boré, Basile Pinsard, Kiril Zelenkovski, Eva Alonso-Ortiz, Julie Boyle, Pierre Bellec, Julien Cohen-Adad
Results of the ISMRM 2020 joint Reproducible Research & Quantitative MR study groups reproducibility challenge on phantom and human brain T1 mapping
Jupyter NotebookMathieu Boudreau, Agah Karakuzu, Julien Cohen-Adad, Ecem Bozkurt, Madeline Carr, Marco Castellaro, Luis Concha, Mariya Doneva, Seraina Dual, Alex Ensworth, Alexandru Foias, Véronique Fortier, Refaat E. Gabr, Guillaume Gilbert, Carri K. Glide-Hurst, Matthew Grech-Sollars, Siyuan Hu, Oscar Jalnefjord, Jorge Jovicich, Kübra Keskin, Peter Koken, Anastasia Kolokotronis, Simran Kukran, Nam. G. Lee, Ives R. Levesque, Bochao Li, Dan Ma, Burkhard Mädler, Nyasha Maforo, Jamie Near, Erick Pasaye, Alonso Ramirez-Manzanares, Ben Statton, Christian Stehning, Stefano Tambalo, Ye Tian, Chenyang Wang, Kilian Weis, Niloufar Zakariaei, Shuo Zhang, Ziwei Zhao, Nikola Stikov
A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn
Jupyter Notebook PythonHao-Ting Wang, Steven L. Meisler, Hanad Sharmarke, Natasha Clarke, François Paugam, Nicolas Gensollen, Christopher J. Markiewicz, Bertrand Thirion, Pierre Bellec
NiMARE: Neuroimaging Meta-Analysis Research Environment
Jupyter Notebook JavaScript PythonTaylor Salo, Tal Yarkoni, Thomas E. Nichols, Jean-Baptiste Poline, Murat Bilgel, Katherine L. Bottenhorn, Dorota Jarecka, James D. Kent, Adam Kimbler, Dylan M. Nielson, Kendra M. Oudyk, Julio A. Peraza, Alexandre Pérez, Puck C. Reeders, Julio A. Yanes, Angela R. Laird
An interactive meta-analysis of MRI biomarkers of myelin
R Jupyter NotebookMatteo Mancini, Agah Karakuzu, Julien Cohen-Adad, Mara Cercignani, Thomas E. Nichols, Nikola Stikov