NeuroLibre is a preprint server for reproducible data analyses.



Committed to publishing executable books along with all the reproducibility assets: code, data, and reproducible runtime.


Rooting for reproducible research. One publication at a time.
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Recently Published Reproducible Preprints 9

published

Paper is not enough: Crowdsourcing the T1 mapping common ground via the ISMRM reproducibility challenge

Jupyter Notebook

Mathieu Boudreau, Agah Karakuzu, Julien Cohen-Adad, Ecem Bozkurt, Madeline Carr, Marco Castellaro, Luis Concha, Mariya Doneva, Seraina A. Dual, Alex Ensworth, Alexandru Foias, Véronique Fortier, Refaat E. Gabr, Guillaume Gilbert, Carri K. Glide-Hurst, Matthew Grech-Sollars, Siyuan Hu, Oscar Jalnefjord, Jorge Jovicich, Kübra Keskin, Peter Koken, Anastasia Kolokotronis, Simran Kukran, Nam. G. Lee, Ives R. Levesque, Bochao Li, Dan Ma, Burkhard Mädler, Nyasha Maforo, Jamie Near, Erick Pasaye, Alonso Ramirez-Manzanares, Ben Statton, Christian Stehning, Stefano Tambalo, Ye Tian, Chenyang Wang, Kilian Weis, Niloufar Zakariaei, Shuo Zhang, Ziwei Zhao, Nikola Stikov

published

Quantitative T1 MRI

Jupyter Notebook

Mathieu Boudreau, Kathryn E. Keenan, Nikola Stikov

published

Longitudinal stability of brain and spinal cord quantitative MRI measures

Jupyter Notebook

Mathieu Boudreau, Agah Karakuzu, Arnaud Boré, Basile Pinsard, Kiril Zelenkovski, Eva Alonso-Ortiz, Julie Boyle, Pierre Bellec, Julien Cohen-Adad

published

A database of the healthy human spinal cord morphometry in the PAM50 template space

Jupyter Notebook

Jan Valošek, Sandrine Bédard, Miloš Keřkovský, Tomáš Rohan, Julien Cohen-Adad

published

Results of the ISMRM 2020 joint Reproducible Research & Quantitative MR study groups reproducibility challenge on phantom and human brain T1 mapping

Jupyter Notebook

Mathieu Boudreau, Agah Karakuzu, Julien Cohen-Adad, Ecem Bozkurt, Madeline Carr, Marco Castellaro, Luis Concha, Mariya Doneva, Seraina Dual, Alex Ensworth, Alexandru Foias, Véronique Fortier, Refaat E. Gabr, Guillaume Gilbert, Carri K. Glide-Hurst, Matthew Grech-Sollars, Siyuan Hu, Oscar Jalnefjord, Jorge Jovicich, Kübra Keskin, Peter Koken, Anastasia Kolokotronis, Simran Kukran, Nam. G. Lee, Ives R. Levesque, Bochao Li, Dan Ma, Burkhard Mädler, Nyasha Maforo, Jamie Near, Erick Pasaye, Alonso Ramirez-Manzanares, Ben Statton, Christian Stehning, Stefano Tambalo, Ye Tian, Chenyang Wang, Kilian Weis, Niloufar Zakariaei, Shuo Zhang, Ziwei Zhao, Nikola Stikov

published

A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn

Jupyter Notebook Python

Hao-Ting Wang, Steven L. Meisler, Hanad Sharmarke, Natasha Clarke, François Paugam, Nicolas Gensollen, Christopher J. Markiewicz, Bertrand Thirion, Pierre Bellec

published

NiMARE: Neuroimaging Meta-Analysis Research Environment

Jupyter Notebook JavaScript Python

Taylor Salo, Tal Yarkoni, Thomas E. Nichols, Jean-Baptiste Poline, Murat Bilgel, Katherine L. Bottenhorn, Dorota Jarecka, James D. Kent, Adam Kimbler, Dylan M. Nielson, Kendra M. Oudyk, Julio A. Peraza, Alexandre Pérez, Puck C. Reeders, Julio A. Yanes, Angela R. Laird

published

An interactive meta-analysis of MRI biomarkers of myelin

R Jupyter Notebook

Matteo Mancini, Agah Karakuzu, Julien Cohen-Adad, Mara Cercignani, Thomas E. Nichols, Nikola Stikov

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